Atomight will be thankful for their assistance. As mentioned in the State of the Game, he will be assuming power in the Alliance - but they will be privy to the fact that he has not yet made a full recovery. Whatever was done to him in those cells has a lingering effect.

With this said, he will maintain contact with his rescuers and will offer them whatever boons they ask for - within reason.

As for the codes, a cipher will be needed to translate their meaning. With the prison mostly destroyed and it's employees in the wind, this may be difficult to come across.